METASPACESpatial metabolomics annotation, made accessible

Annotate, explore, and share your mass spectrometry imaging data — all in one place.

New to METASPACE?

Follow a stage-by-stage map from raw data to published results — with links to the right page at every step.

Your METASPACE journey

Learn how to export your data to imzML, configure annotation parameters, and submit your dataset for processing.

Before you submit

Dive into the annotation page, interpret ion images, filter results, and make sense of colocalization and off-sample filtering.

Read your output

Discover visualization tools, spatial pattern analysis, ROI selection, custom databases, the Python client, and more.

Browse all features